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CreateCallRegions · 1 contributor · 1 version

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Quickstart

from janis_bioinformatics.tools.dawson.createcallregions.base import CreateCallRegions

wf = WorkflowBuilder("myworkflow")

wf.step(
    "createcallregions_step",
    CreateCallRegions(
        reference=None,
        regionSize=None,
    )
)
wf.output("regions", source=createcallregions_step.regions)

OR

  1. Install Janis
  2. Ensure Janis is configured to work with Docker or Singularity.
  3. Ensure all reference files are available:

Note

More information about these inputs are available below.

  1. Generate user input files for CreateCallRegions:
# user inputs
janis inputs CreateCallRegions > inputs.yaml

inputs.yaml

reference: reference.fasta
regionSize: 0
  1. Run CreateCallRegions with:
janis run [...run options] \
    --inputs inputs.yaml \
    CreateCallRegions





 Information
 ------------


 :ID: ``CreateCallRegions``
URL:No URL to the documentation was provided
Versions:v0.1.0
Container:python:3.8.1
Authors:Sebastian Hollizeck
Citations:None
Created:2020-06-17
Updated:2020-07-16

name type documentation ======= ============= =============== regions Array<String> ======= ============= ===============

name type documentation ========== ================= =============== reference FastaFai regionSize Integer equalize Optional<Boolean> ========== ================= ===============